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Molecular Dynamics Inc visual molecular dynamics software 1.9.3 version
Visual Molecular Dynamics Software 1.9.3 Version, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visual+molecular+dynamics+software+version+1%2E9%2E3/namd2/pm39950843-83-3-3
Average 90 stars, based on 1 article reviews
visual molecular dynamics software 1.9.3 version - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Generated:

Article Title: Fullerenes’ Interactions with Plasma Membranes: Insight from the MD Simulations
Article Snippet: The Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] was used for all visualizations.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The protein structures were generated using Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The co-crystallised ligand and solvent molecules were removed using Visual Molecular Dynamics (VMD) software version 1.9.3 .

Article Title: Investigation of salicylidene acylhydrazides derivatives: Molecular Docking, ADMET, and Molecular Dynamic Simulations were used in conjunction towards the design of new Yersinia pseudotuberculosis inhibitors
Article Snippet: The molecular dynamics simulations (MDS) were carried out using the nanoscale molecular dynamics (NAMD) software version 2.13 [26], and the visual molecular dynamics (VMD) software version 1.9.3 [27] was used to visually display, analyzed, and animate trajectories [27].

Article Title: Epidemiology and genetic diversity of norovirus GII genogroups among children in Hubei, China, 2017–2019
Article Snippet: Structural similarity models representing the VP1 protein P domains of GII.4 Sydney variants were generated using Swiss-Model and visualized via Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent.
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [40] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [53] based on the abovementioned files obtained by Multiwfn.

Article Title: Smaller Is Better: The Case for Lower-Order Iodoplumbate Species Dominating MAPbI<sub>3</sub>/Dimethylformamide Solutions
Article Snippet: Visualizations The structures and trajectories obtained from both the AIMD simulations and gas−phase optimizations were visualized using the Visual Molecular Dynamics (VMD) software version 1.9.3.S16 The graphics were created using POV−Ray version 3.7 and Visualization for Electronic and STructural Analysis (VESTA).S17

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [ ] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] based on the abovementioned files obtained by Multiwfn.

Software:

Article Title: Fullerenes’ Interactions with Plasma Membranes: Insight from the MD Simulations
Article Snippet: The Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] was used for all visualizations.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The protein structures were generated using Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The co-crystallised ligand and solvent molecules were removed using Visual Molecular Dynamics (VMD) software version 1.9.3 .

Article Title: Investigation of salicylidene acylhydrazides derivatives: Molecular Docking, ADMET, and Molecular Dynamic Simulations were used in conjunction towards the design of new Yersinia pseudotuberculosis inhibitors
Article Snippet: The molecular dynamics simulations (MDS) were carried out using the nanoscale molecular dynamics (NAMD) software version 2.13 [26], and the visual molecular dynamics (VMD) software version 1.9.3 [27] was used to visually display, analyzed, and animate trajectories [27].

Article Title: Epidemiology and genetic diversity of norovirus GII genogroups among children in Hubei, China, 2017–2019
Article Snippet: Structural similarity models representing the VP1 protein P domains of GII.4 Sydney variants were generated using Swiss-Model and visualized via Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent.
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [40] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [53] based on the abovementioned files obtained by Multiwfn.

Article Title: Smaller Is Better: The Case for Lower-Order Iodoplumbate Species Dominating MAPbI<sub>3</sub>/Dimethylformamide Solutions
Article Snippet: Visualizations The structures and trajectories obtained from both the AIMD simulations and gas−phase optimizations were visualized using the Visual Molecular Dynamics (VMD) software version 1.9.3.S16 The graphics were created using POV−Ray version 3.7 and Visualization for Electronic and STructural Analysis (VESTA).S17

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [ ] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] based on the abovementioned files obtained by Multiwfn.

Residue:

Article Title: Fullerenes’ Interactions with Plasma Membranes: Insight from the MD Simulations
Article Snippet: The Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] was used for all visualizations.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The protein structures were generated using Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The co-crystallised ligand and solvent molecules were removed using Visual Molecular Dynamics (VMD) software version 1.9.3 .

Article Title: Investigation of salicylidene acylhydrazides derivatives: Molecular Docking, ADMET, and Molecular Dynamic Simulations were used in conjunction towards the design of new Yersinia pseudotuberculosis inhibitors
Article Snippet: The molecular dynamics simulations (MDS) were carried out using the nanoscale molecular dynamics (NAMD) software version 2.13 [26], and the visual molecular dynamics (VMD) software version 1.9.3 [27] was used to visually display, analyzed, and animate trajectories [27].

Article Title: Epidemiology and genetic diversity of norovirus GII genogroups among children in Hubei, China, 2017–2019
Article Snippet: Structural similarity models representing the VP1 protein P domains of GII.4 Sydney variants were generated using Swiss-Model and visualized via Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent.
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [40] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [53] based on the abovementioned files obtained by Multiwfn.

Article Title: Smaller Is Better: The Case for Lower-Order Iodoplumbate Species Dominating MAPbI<sub>3</sub>/Dimethylformamide Solutions
Article Snippet: Visualizations The structures and trajectories obtained from both the AIMD simulations and gas−phase optimizations were visualized using the Visual Molecular Dynamics (VMD) software version 1.9.3.S16 The graphics were created using POV−Ray version 3.7 and Visualization for Electronic and STructural Analysis (VESTA).S17

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [ ] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] based on the abovementioned files obtained by Multiwfn.

Mutagenesis:

Article Title: Fullerenes’ Interactions with Plasma Membranes: Insight from the MD Simulations
Article Snippet: The Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] was used for all visualizations.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The protein structures were generated using Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The co-crystallised ligand and solvent molecules were removed using Visual Molecular Dynamics (VMD) software version 1.9.3 .

Article Title: Investigation of salicylidene acylhydrazides derivatives: Molecular Docking, ADMET, and Molecular Dynamic Simulations were used in conjunction towards the design of new Yersinia pseudotuberculosis inhibitors
Article Snippet: The molecular dynamics simulations (MDS) were carried out using the nanoscale molecular dynamics (NAMD) software version 2.13 [26], and the visual molecular dynamics (VMD) software version 1.9.3 [27] was used to visually display, analyzed, and animate trajectories [27].

Article Title: Epidemiology and genetic diversity of norovirus GII genogroups among children in Hubei, China, 2017–2019
Article Snippet: Structural similarity models representing the VP1 protein P domains of GII.4 Sydney variants were generated using Swiss-Model and visualized via Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent.
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [40] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [53] based on the abovementioned files obtained by Multiwfn.

Article Title: Smaller Is Better: The Case for Lower-Order Iodoplumbate Species Dominating MAPbI<sub>3</sub>/Dimethylformamide Solutions
Article Snippet: Visualizations The structures and trajectories obtained from both the AIMD simulations and gas−phase optimizations were visualized using the Visual Molecular Dynamics (VMD) software version 1.9.3.S16 The graphics were created using POV−Ray version 3.7 and Visualization for Electronic and STructural Analysis (VESTA).S17

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [ ] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] based on the abovementioned files obtained by Multiwfn.

Solvent:

Article Title: Fullerenes’ Interactions with Plasma Membranes: Insight from the MD Simulations
Article Snippet: The Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] was used for all visualizations.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The protein structures were generated using Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Role of CSF1R 550th-tryptophan in kusunokinin and CSF1R inhibitor binding and ligand-induced structural effect
Article Snippet: The co-crystallised ligand and solvent molecules were removed using Visual Molecular Dynamics (VMD) software version 1.9.3 .

Article Title: Investigation of salicylidene acylhydrazides derivatives: Molecular Docking, ADMET, and Molecular Dynamic Simulations were used in conjunction towards the design of new Yersinia pseudotuberculosis inhibitors
Article Snippet: The molecular dynamics simulations (MDS) were carried out using the nanoscale molecular dynamics (NAMD) software version 2.13 [26], and the visual molecular dynamics (VMD) software version 1.9.3 [27] was used to visually display, analyzed, and animate trajectories [27].

Article Title: Epidemiology and genetic diversity of norovirus GII genogroups among children in Hubei, China, 2017–2019
Article Snippet: Structural similarity models representing the VP1 protein P domains of GII.4 Sydney variants were generated using Swiss-Model and visualized via Visual Molecular Dynamics (VMD) software version 1.9.3.

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent.
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [40] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [53] based on the abovementioned files obtained by Multiwfn.

Article Title: Smaller Is Better: The Case for Lower-Order Iodoplumbate Species Dominating MAPbI<sub>3</sub>/Dimethylformamide Solutions
Article Snippet: Visualizations The structures and trajectories obtained from both the AIMD simulations and gas−phase optimizations were visualized using the Visual Molecular Dynamics (VMD) software version 1.9.3.S16 The graphics were created using POV−Ray version 3.7 and Visualization for Electronic and STructural Analysis (VESTA).S17

Article Title: Selective and Efficient Synthesis of Pine Sterol Esters Catalyzed by Deep Eutectic Solvent
Article Snippet: The isosurface maps, 2D scatter and independent gradient model based on the Hirshfeld partition (IGMH) [ ] were rendered by Visual Molecular Dynamics (VMD) software version 1.9.3 [ ] based on the abovementioned files obtained by Multiwfn.



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